chessboard.api.analysis.outputLSVLists

chessboard.api.analysis.outputLSVLists(data, file)

Output Excel .xlsx file containing summary statistics

Outputs .xlsx file with the following tabs: 1. For each discovered tile, a tab showing the samples and LSVs in the tile along with the marignal probability of sample and LSV assignment to the tile. 2. A tab containing all LSVs that did not appear in any cluster (consensus background). 3. A tab showing missing value signals. For each LSV, if the signal group had an excess of missing values, show the increased missingness rate and fisher p-value of missingness enrichment.

Parameters

• index – CHESSBOARD object containing the data. CHESSBOARD output must be added and summarized. See chessboard.api.io() and chessboard.api.postsum()

• file (str) – Path to output file.