chessboard.api.io.loadTSV

chessboard.api.io.loadTSV(file1, file2)

Load data from .tsv files.

Load junction spanning read counts produced by other software in .tsv format. Each column of the .tsv is a sample and each row is a splice junction. file1 should contain the reads mapped to the junction and file2 should contain all other reads in the normalization unit (e.g. LSV, intron cluster, entire gene etc). Missing values should agree in position between both files.

Parameters

• file1 (str) – Path to .tsv file containing junction spanning read counts.

• file2 (str) – Path to .tsv containing reads mapped to all other junctions in the splicing normalization unit.

Returns

A CHESSBOARD object containing the input data.

Return type

chessboard.api.io.Data