chessboard.api.prefilter.VarFilter

chessboard.api.prefilter.VarFilter(data, var_thresh)

Variance filter

Filters the LSVs in a Chessboard object by variance up to some variance threshold.

Parameters

  • data (Data) – Chessboard object.

  • var_thresh (float) – Variance threshold. LSVs with variance across the samples above this value are retained.